Welcome to JAAN's science class!!

Big hi to all of you! I'm an undergraduate following a Bsc in bioscience. Trust me I know the feeling of surfing around the net for ages and getting nothing in return! Or getting something worthless for the time we spent surfing. So I started this blog adding the science stuff I have noted which I think might help someone in their home work. Ok then enjoy!
Showing posts with label chemistry. Show all posts
Showing posts with label chemistry. Show all posts

01 January 2014

Mushroom poisoning

Ingestion of potentially poisonous mushrooms leads to the harmful health effect of mushroom poisoning which is also known as Mycetism. Previous experience and observation make it possible to discriminate between poisonous and non-poisonous mushrooms. Depending on the type of mushroom, the adverse effects range from mild gastrointestinal (GI) symptoms to major cytotoxic effects resulting in organ failure and death. Toxicity may also vary depending on the amount and age of the mushroom, the season, the geographic location and the way in which the mushroom was prepared prior to ingestion. Consumption of poisonous mushrooms can cause various types of reactions, such as allergic gastroenteritis, psychological relaxation and fatal liver intoxication. Mushroom poisoning occurs among four main groups of individuals: young children who ingest mushrooms inadvertently, wild-mushroom foragers, individuals attempting suicide or homicide and individuals looking for a hallucinatory high. Mushroom poisoning cannot be made nontoxic by cooking, freezing or any other way other than avoiding the consumption of the poisonous species.

i.                    Protoplasmic poisoning
Poisoning by the poisonous mushrooms can severely affect the protoplasm of cell resulting disturbances in the essential life functions of a cell. Chemical toxins such as Amatoxins, Hydrazines and Orelanine in mushrooms cause the protoplasmic poisoning.
  • Amatoxins

Amatoxins (cyclic octapeptides) represent 1 of the 3 major groups of cyclopeptides (in addition to phallotoxins and virotoxins); they are heat-stable, insoluble in water, and not destroyed by drying. The most significant of these are the alpha and beta subtypes of amanitin. Currently 10 types of amatoxins are recognized.
α-Amanitin                        Amanullin                               
Amanullinic acid               Proamanullin
Amaninamide                   Amanin
β-Amanitin                        γ-Amanitin                  ε-Amanitin     
Mushrooms that contain amatoxins;
-       Death cap: Amanita phalloides
Native to Europe. The smell has been described as initially faint and honey-sweet, but strengthening with time. Introduced to Africa, North America and Australia by importation of hardwoods and conifers especially Oak which the mushroom is associated with.
-        Destroying angel: Amanita bisporigera, A. ocreata, A. virosa
Amanita bisporigera and A. ocreata can be found in North America while A. virosa is native to Europe. Can be mistaken to button and horse mushrooms.
-        Fool’s mushroom: Amanita verna
Found in Europe.
-        Autumn skullcap: Galerina autumnalis
Found throughout the world but especially in America. Commonly grows on wood, and when on the ground when it has preference to mossy habbitats.

  • Hydrazines

False morel mushrooms contains a carcinogenic hydrazine, gyromitrin. It is unstable and is easily hydrolyzed to the toxic compound monomethylhydrazine. Consuming a large amount of gyromitrin can in worst case cause liver damage leading to death. Most of this toxin is removed when the mushroom is double boiled and rinsed, rendering it relatively safe for consumption. Main species of false morel is Gyromitra esculenta which is widely distributed in Europe in North America.

  • Orellalnine

A mycotoxin which is a pyridine N-oxide. An intense, burning thirst (polydipsia) and excessive urination (polyuria) are the first symptoms. This may be followed by nausea, headache, muscular pains, chills, spasms, and loss of consciousness. In severe cases, severe renal tubular necrosis and kidney failure may result in death (15%) several weeks after the poisoning. Caused by the Sorrel Webcap mushroom (Cortinarius orellanus) and some of its relatives.

ii.                  Neurotoxins
Poisonings by mushrooms that cause neurological problems are divided into three groups, based on the type of symptoms produced, and named for the substances responsible for these symptoms.
  • Muscarine Poisoning

This is due to the substance Muscarine which is particularly found in Inocybe and Clitocybe mushroom species. It is a highly toxic alkaloid related to the cholines and nonselective agonist of the muscarinic acetylcholine receptor. Within 15 to 30 minutes after ingestion of the mushroom increased salivation, perspiration, and lacrimation occur. Abdominal pain, severe nausea, diarrhea, blurred vision and breathing difficulties occur with large doses.
  • Ibotenic acid/Muscimol Poisoning

Ibotenic acid is a powerful neurotoxic isoxazole substance and Muscimol is a psychoactive alkaloid. Both substances cause the same effects, but muscimol is approximately 5 times more effective than ibotenic acid. Naturally occurring in Fly Agaric (Amanita muscaria) and Panthercap (Amanita pantherina) mushrooms Drowsiness and dizziness are the main symptoms of this type of poisoning.
  • Psilocybin Poisoning

Psilocybin is a tryptamine compound with a chemical structure containing an indole ring linked to an ethylamine substituent. It is structurally similar to the neurotransmitter serotonin. This is a naturally occurring toxin in mushrooms known as Psilocybin mushrooms. When consumed this cause a syndrome similar to alcohol intoxication.

iii.                Gastro-Intestinal irritants
The gastrointestinal irritants are the least defined and most widespread of the mushroom toxins.  Symptoms are mild, short-lived stomach discomfort to vomiting and diarrhea. The specific responsible toxins are generally unknown, but can be due to mushrooms of unusual sugars, amino acids, peptides, resins, and other compounds. Ex: Green Gill (Chlorophyllum molybdites), Tigertop (Tricholoma pardinum), Jack O'Lantern (Omphalotus illudens), Naked Brimcap (Paxillus involutus), Sickener (Russula emetica)

iv.                Disulfiram-like poisoning
The disulfiram-like compound coprine, an amino acid produced by mushrooms of the genus Coprinus, notably C. atramenarius, the Alcohol Inky causes this type of poisoning. Coprine is converted to cyclopropanone hydrate in the human body. This compound interferes with the breakdown of alcohol. The symptoms are generally mild, consisting of flushing of the head and neck, tingling of the extremities, heart palpitations, headache and nausea.  It is regarded as edible, with caution as  it has no adverse side effects if alcohol is not consumed for about three days.

v.                  Miscellaneous poisoning

Young fruiting bodies of the sulfur shelf fungus Laetiporus sulphureus are regarded as edible but ingestion of it has caused digestive problems and allergies in some people. It is recommended not to it in raw form. 

Aflatoxins
Aflatoxin belongs to a group of fungal toxins known as mycotoxins, and is widespread in agricultural products and food.

Toxin producing agent:  Produced primarily by the fungi Aspergillus;
·         Aspegillus flavus
·         parasiticus
·         nomius and A. niger

Associated food: Corn, figs, nuts, cereals, milk and milk products, peanuts, cottonseed, spices.


Characteristics and chemical mechanism of the toxin:
·        
Classified into a number of subtypes. The most important ones are B1, B2, G1 and G2, distinguished by their fluorescent colour under ultraviolet light. In addition, aflatoxin M1 and M2 are hydroxylated metabolites of aflatoxin B1 and B2.
·         Odourless, tasteless and colourless.
·         Chemically stable in foods and resistant to degradation under normal cooking procedures.
·         Accumulation is dependent upon weather conditions. Before harvest, the risk for the development of aflatoxin is greatest during major droughts as the number of Aspergillus spores in the air increases. These spores infect crops through areas of damage caused by insects, and inclement weather. Once infected, plant stress occurs; the production of aflatoxin is favoured. During post-harvest stage, production of aflatoxin can be worsened under storage conditions such as hot and humid storage atmosphere.

Natural occurrence:
·         Aspergillus sp infect agricultural supplies either before harvest or at post-harvest stages under favourable conditions of temperature and humidity.
·         The aflatoxigenic moulds are mainly found in soils and decaying vegetation.
·         Occur in warmer parts of the world such as tropical/sub-tropical regions where temperature and moisture are high.
·         Milk, eggs, and meat products can be contaminated because of the animal consumption of aflatoxin-contaminated feed.

Impact:
·         Associated with both acute and chronic toxicity in animals and humans.
·         Include acute liver damage, liver cirrhosis, and liver cancers. Symptoms may include fever, vomiting and jaundice.
·         Chronic toxicity associated with consumption of low dose aflatoxin mainly in peanuts and grains.
·         Epidemiologically implicated as a carcinogen in humans and an environmental contaminant which is widespread in nature.
·         Recent medical research indicates that a regular diet including apiaceous vegetables such as carrots, parsnips and parsley, may reduce the carcinogenic effects of aflatoxin.
·         Aflatoxin B1 can permeate through the skin. Dermal exposure to these aflatoxin in particular environmental conditions can lead to serious health risks.
·         As aflatoxin B1 can cause immune suppression, exposure is associated with an increased viral load in HIV positive individuals.

09 July 2012

Special reactions/tests for Urea, Formamide, Oxamide, Salicylamide, Succinimide, Phthalimide


Urea

Urea nitrate and oxalate: Take a concentrated solution of urea, to one portion, add a few drops of con. HNO3: the white crystalline urea nitrate (m.p. is 163°) is precipitated; to another portion, add con. Oxalic acid solution and scratch with a glass rod. White crystals of urea oxalate (m.p. is 171°) are separated. In an excess of water both salts dissolve.

Biurate reaction: Take 0-2 g of urea into a dry test-tube and heat gently above the melting point. NH3 is evolved. After 2 minutes the liquid rapidly solidifies with the formation of biuret.

2NH2CONH2à NH2CONHCONH2 + NH3

Dissolve the solid residue in a few ml. of warm 10% NaOH solution. Stand it to cool and add 1 drop of dil. CuSO4 solution. A purple coloration is obtained. A pink/purple coloration is due to containing two -CONH- groups attached to one another, or to the same carbon atom or nitrogen atom. Therefore the same colouration is also given by malonamide, oxamide and by proteins/peptides.

Urease test: Urease enzymes can hydrolys Urea to Ammonium carbonate. The reaction is specific. It is used for solutions of urea to which the biuret test cannot be applied.

Action of hypobromite: Add sodium hypobromite solution to a solution of urea. The brisk effervescence is given.

NH2CONH2 + 3NaOBr à N2 + CO2 + 3NaBr + 2H2O

Formamide
Boil 1 ml of formamide in a test-tube. NH3is evolved from it.  CO is produced, but cannot be ignited in the presence of the NH3.

Oxamide

Biuret test: Oxamide does not need any preliminary treatment to proceed with the test. Shake 1 g of oxamide with 1ml of 10% NaOH solution. Add 1 drop of very dilute CuSO4 solution to it and mix well. A pink coloration is produced.

Sulphuric acid test: Heat 0-3 g of Oxamide with con. H2SO4. CO and CO2 are evolved.

Salicylamide

FeCl3 coloration: Take the solid into a test tube. Add FeCl3 solution and shake. An intense violet coloration is produced as the Phenolic groups are present.

Succinimide

Reduction: Take about 1 g of succinimide and an equal amount of Zn dust into a dry hard-glass test tube and mix well. Heat strongly. Soak a pinewood splinter in con.HCl and place it in the mouth of the tube. The splinter is turned red by the vapour of pyrrole which is formed by reduction.

Fluorescein reaction: Take about 1 g of Succinimide, 1 g of resorcinol and 2 drops of con. H2SO4 into a dry test tube and fuse all of it together. Cool and add water. Then add NaOH solution in excess. A green fluorescent solution is produced.

Phthalimide

Phthalein reaction: Take about 1 g of Phthalimide, 1 g of phenol and 2 drops of con. H2SO4 into a dry test-tube and fuse all together very gently. Let it cool and add water. Then add NaOH solution in excess. A red coloration is produced which is decolorized by acids.

Fluorescein reaction: Repeat the above test, using resorcinol instead of phenol. A green fluorescent solution is produced on the addition of NaOH solution.

07 July 2012

Physical properties of common organic compounds (In brief)

One of the easiest ways to get an idea about an unknown organic substance is to check for its physical properties first. Physical properties are appearance, state, odour, colour, solubility in water etc. Below are some general physical properties of common organic substances.

Odour
Fruity odour: Esters, ethers.
Odour of almonds: Benzaldehyde, Nitrobenzene, Benzonitrile,
Pungent odour: Pyridine, Formic acid, Acetic acid, Benzoyl chloride, Benzyl chloride, Acetyl chloride.
Many phenols give a unique Phenolic odour. Also some derivatives of salicylic acid such as Salicylaldehyde.

Colour
Orange: Ortho-Nitro-aniline, Alizarin.
Yellow:  Quinones, m-nitroaniline, o-nitrophenol, and many other nitro-compounds. Also Iodoform.
Red: i,2-Naphthoquinone.
Blue: Commonly Copper salts.

Solubility in water
Soluble in cold water: Lower aliphatic alcohols, lower aliphatic aldehydes & ketones, lower aliphatic nitriles, lower aliphatic acid chlorides, aliphatic amines, pyridine, salts of amines, glycine, some phenols, aliphatic acids, sulphonic acids, ammonium salts and alkali salts of all acids, methyl esters of certain acids such as  formic, oxalic, succinic and tartaric. Also some aliphatic amides and imides, such as succinimide.

Almost insoluble in cold water: Higher ketones, most esters, ethers, higher alcohols, higher phenols, Benzyl alcohol, metaformaldehyde, Aromatic aldehydes, aromatic acids, aromatic amides, aromatic imides, aromatic amines, aromatic nitriles, aromatic acid anhydrides, aromatic acid chlorides, sulphonamides, sulphonyl chlorides, starch, anilides, uric acid, hydrocarbons.

Hydrolysed with water: Acids, esters can hydrolyse easily. Acid anhydrides, acid chlorides, salts of amines and nitrophenols.

Using  litmus-paper on a solution
Weakly acidic: Phenols. Except for nitrated phenols, phenols do not liberate CO2 from Na2CO3 solution.
Weakly alkaline: Alkali salts of some weak acids and pyridine.

25 June 2012

Polymerase Chain Reaction ( PCR )


This is a method to produce very large numbers of copies of specific DNA sequences without cloning. Therefore PCR can amplify specific sequences or add sequences such as  endonuclease  recognition  sequences as primers to cloned DNA.

PCR consists of 5 main components.
-Target DNA
-Single stranded Oligonucleotides (primers)
-d NTPs (dATP, dCTP, dTTP, dGTP)
-Taq DNA polymerase
-Termocycler

There are three main steps in PCR.

Step1:  Denaturation. The mixture of excess primer and DNA fragment is heated to about 95° C causing the double strands of target DNA to be denatured into single strands.

Step 2: Annealing of Primers. The temperature is dropped down between about 350- 65°C
As the temperature decreases the single strands of DNA reassociate into double strands. Large excess of primer allows two primers anneal or bind to their complementary sequences on the target DNA leaving the rest of the fragment single-stranded.

Step 3: Primer Extension. The temperature is raised to 700- 75°C Taq  polymerase is added. Taq polymerase extends the primer into a complementary copy of the entire single-stranded fragment, in the 5’-3’ direction.  As both the DNA strands are replicated, two copies of the original fragment are gained.

This process is repeated many times. At each time, the number of DNA copies doubles. This is continued until enough copies are gained for the analysis. 


photo





06 May 2012

Serotonin the neurotransmitter


Serotonin i.e. 5-hydroxytryptamine (5-HT) is a monoamine neurotransmitter that is said to be helping to relay signals from one area of the brain to another. However its primary functions are found in gastrointestinal tract as 90% of total serotonin is located in the enterochromaffin cells in the gut. 

Serotonin is made via a unique biochemical conversion process that begins with Tryptophan. Tryptophan is a building block to proteins. In the synthesis of serotonin, Tryptophan hydroxylase the enzyme combines with tryptophan to form 5-hydroxytryptophan metabolite that later converts to Serotonin.

 On top a L-tryptophan molecule with an arrow down to a 5-HTP molecule.  Tryptophan hydroxylase catalyses this reaction with help of O2 and tetrahydrobiopterin which becomes water and dihydrobiopterin. From the 5-HTP molecule goes an arrow down to a serotonin molecule. Aromatic L-amino acid decarboxylase or 5-Hydroxytryptophan decarboxylase catalyses this reaction with help of pyridoxal phosphate. From the serotonin molecule goes an arrow to a 5-HIAA molecule at the bottom ot the image. Monoamine oxidase catalyses this reaction, in the process O2 and water is consumed, and ammonia and hydrogen peroxide is produced.
Via wikipedia.org

As mentioned earlier serotonin helps to distribute messages across the brain. Brain cells related to mood, appetite, sleep, memory, learning, temperature regulation, sexual desire and some social behaviour are influenced either directly or indirectly by serotonin due to the widespread distribution in the brain. 
It can also affect the functioning of the cardiovascular system, muscles, and various elements in the endocrine system.

When it comes to mental health, it is widely believed that a serotonin deficiency plays a role in depression but there is no way to measure its levels in the living brain. Therefore, there have not been any studies proving that brain levels of this or any neurotransmitter are in short supply when depression or any mental illness develops. People who suffer from depression shows lower serotonin levels in blood levels but still it is not revealed that whether the blood levels reflect the brain's level of serotonin.

Antidepressant medications such as SSRIs (selective serotonin reuptake inhibitors) and SNRIs (serotonin and norepinephrine reuptake inhibitors) that work on serotonin levels are believed to lower the symptoms of depression, but their exact function is not fully understood.

Recent studies show that when the Mycobacterium vaccae, which occurs naturally in soil and is often breathed in when spending much time nature, is injected into mice, it stimulates neuron growth and causes serotonin levels in blood to increase. So that the bacteria could have antidepressant benefits but it is not yet revealed whether it has an effect on human.


02 May 2012

Simple facts about Betalain


Betalains are alkaloid pigments which are found in some families of plants belonging to the order Caryophyllales, but in no other plants.
They are named after the Beet family of plants (Beta).


photo


Betalains are not found in plants containing anthocyanin pigments. Structurally they are unrelated. Unlike anthocyanins, they are not pH indicators as their colour is stable over a wide range of pH.  They are oxidised over time going brown in colour. This can be prevented by 0.1% ascorbic acid.

They have also been found in some fungi too e.g. Fly Agaric (mushroom)
Betalains can be divided into two types as betacyanins and betaxanthins; based upon their molecular structure.
Betacyanins
Usually appear red to red violet in colour (absorbance in 535-550nm)

Betaxanthins
Usually appear yellow in colour (absorbance in 475-480nm)

Betalains are found in the vacuole and they are water-soluble.
Also they cause colour in both flowers, fruits and sometimes vegetative organs
Beetroot contains 2 Betacyanins. Thay are Betanin and a derivative.

Not much is known about the role of betalains. Commercially they are sometimes used as food colourants. As a food dye it’s cheap and no all allergic side effects are figured out yet.

Basic structure of betalain



27 April 2012

Use of colorimeter for the determination of the concentration of a solution


Absorbance is important in determining concentration of a substance in a sample through colorimeter analysis. Colorimeter measures the intensity of colour and light transmittance by the sample to achieve the concentration. When a beam of light passes through a coloured solution, the amount of light absorbed depends on the nature of the molecules absorbing the light, their concentration and thickness (path length) of the solution. The ratio of transmitted intensity to original intensity s known as the “transmittance”, T.

Transmittance (T) = I/I0
I = intensity of the transmitted light
I0 = intensity of incident light

The Beer- Lambert law states that there is a logarithmic dependence between the transmittance and the absorbance. Therefore the transmittance is expressed in terms of absorbance;

Absorbance (A) = -log10 T
                             = -log10 (I/I0)
According to this, the absorbance becomes linear with concentration considering;

A = ℰ ℓ C

ℰ = Molar absorbance coefficient
ℓ = path length
C = concentration of the solution

Therefore in dilute solution,

A = -log10 (I/I0) = ℰ ℓ C

Molar absorbance coefficient indicates the absorbance under a standard set of conditions, i.e. the light travelling 1cm through a solution of 1moldm-3. In a material with a low absorption coefficient, light is poorly absorbed and vise versa. This depends on the material and on the wave length of the light.
When using the colorimeter the path length i.e. the width of the glass cell is constant. Also the concentration of one solution used at one specific wave length. Therefore ℰ is also constant through the measurements. This shows out clear relationship between the absorbance and the concentration.

A ∝ C as ℓ and ℰ are constant

The glass cell/ container with plane parallel faces are transverse by monochromatic radiation in the colorimeter. If the glass cell is filled with non absorbing solution, there is 100% transmittance; therefore the absorption would be zero.

Colorimeter applies only in relation to the visible region. Also Beer- Lambert law is applicable for 0.800-0.200 absorbances.

In the experiment, firstly the absorbance reading of the colorimeter should be zeroed using distilled water as distilled water is used to prepare the solutions. 
Also before taking the measurements of the absorbance value in each solution, the glass cell should be washed with distilled water in order to prevent interferences to the reading. It is important not to touch the two smooth surfaces of the glass cell and wipe out the additional drops remain on the surfaces of the glass cell, using a tissue. Otherwise the beam of the radiation would be scattered incorrectly and interfere the accuracy of the reading.

When filling the cell, air bubbles should not be remained inside the cell as it would decrease the absorbance value.
When refilling a glass cell with a different solution, small amount of the new solution should be used to rinse the cell before filing as it would give more accurate results.

Spectrophotometer also uses a monochromatic light to pass though a solution and measure its absorbance. The principle of spectrophotometer and colorimeter is same but a colorimeter can only use one wavelength at a time and have a fixed number of wavelengths that can be used. Also they have to be in visible range only.
A spectrophotometer on the other hand can not function like a colorimeter but take a spectrum of a solution across the entire wave spectrum especially in UV – IR. Therefore use of spectrophotometer is beneficial than a colorimeter and useful to determine concentration of unknown solutions.


28 March 2012

Applications of conductivity measurements: Calculating the solubility product of a partially soluble salt (Lab report)



Theory
The solubility of poorly soluble salts is expressed as the solubility product. That is the product of the concentration of ions in the solution which are in equilibrium with the solid ion. These concentrations can be determined via conductivity measurements. In this practical PbSO4 is used.
                                 PbSO4 ⇌ Pb2+ + SO42-
Assume concentration of solid is a constant.
Concentration of Pb2+= concentration of SO42- = C
                             \  Ksp = [Pb2+aq] [SO42-aq]
                                    Ksp = C2

The measurement of the specific conductivity, K of the saturated solution leads to a value of the concentration.
                      i.e.       C = K/ Λ0
                      As,   Ksp = C2
                               Ksp = (K/ Λ0)2

 Λ0 for PbSO4 = 3.02 × 10-2 m2Smol-
Λ0 = Molar conductivity at infinite dilution

Procedure
About 2g of finely powdered PbSO4 was measured using the electric balance into a clean, dry watch glass.
It was added to a clean beaker. The watch glass was washed with distilled water and that washed water was also added to the beaker.
To remove impurities it was shaken by adding distilled water. It was kept aside for a while, for the salt to be collected at the bottom of the beaker. Then the upper layer was decanted and repeated this step for several times.
An empty reagent bottle was kept in a water bath at 240C in order to maintain the temperature of the reagent bottle at 250C.
Then the well- washed salt was added to the reagent bottle and added 100mL of distilled water.
After awhile without disturbing the solid, the clear upper solution was decanted into a clean beaker and the conductivity was measured.

Results
K of distilled water at 250C = 4.2 µS/cm
K of PbSO4 at 250C = 39.2 µS/cm

Calculations
Corrected conductivity of PbSO4 = (39.2 – 4.2) µS/cm
                                                           = 35.0 µS/cm
                                                                  = 35.0 × 10-2 Sm-
C = K/ Λ0
C = 35.0 × 10-2 Sm- / 3.02 × 10-2 m2Smol-
C = 0.11589 molm-3
C = 0.11589 × 10-3 moldm-3
PbSO4 ⇌ Pb2+ + SO42-
Ksp = [Pb2+aq] [SO42-aq]
Ksp = C2
Ksp = (0.11589 × 10-3 moldm-3)2
         = 1.3430 × 10-8 mol2 dm-6

Conclusion
Exact given Ksp at 250C is 1.6 × 10-8 mol2 dm-6. Practically obtained Ksp at 250C is 1.3430× 10-8 mol2 dm-6
As the both values are closer we can use conductivity measurements in order to calculated KSP.

Discussion
The precipitate was washed in order to remove impurities that may affect the results. It should be washed several times to obtain a well- washed precipitate. During this process, precipitate can be also removed. Therefore all 2g of the sample wouldn’t be left.

When maintaining the temperature  of 250C, the water bath was kept at a temperature about 240C. this is because we measure the temperature of the water bath assuming the temperature inside the reagent bottle is at 250C. But actually the temperature of the solution inside would be slightly higher than the temperature of the water bath as the glass of the reagent bottle separates both. Therefore the temperature of the water bath was kept at lower temperature to obtain the required temperature for the solution.

Reagent bottle should be shaken time to time when it was kept in the water bath. This is to increase the dissociation and reach the equilibrium. If not, we might have not measured the conductivity at the equilibrium and that will alter the true Ksp value.

The calculated Ksp value is slightly smaller than the exact given Ksp value due to errors occurred during the experiment. Mainly the personal errors. Such as temperature maintaining errors, measuring errors and personal carelessness.

When preparing the solutions, the distilled water was added. Distilled water also contains ions it self. Therefore additional conductivity from the distilled water would be raised in the solution. For this reason the conductivity of the solution is corrected by deducting the conductivity of water. 



12 March 2012

Basics of electroplating


Electroplating is the process of depositing a layer of metal electrolytically on to a surface.The articles to be plated make the cathode of an electrolytic cell and a rod of the plating metal makes the anode.

Normally pure metals are used. E.g. Cu, Ni, Cr, Au, Ag, Pt, Zn
But there are exceptions such as Alloys (Cu-Zn, Ni-Cr) and metal with polymers or ceramics (metal-PTEF, metal- Ceramic)

Requirements for electroplating  
-Proper bonding between the plating material and the surface.
-Evenness of the plating.
-Cleanliness
-Leak holes must not be left.
-Texture: should have high brightness.
-Resistant to chemicals in the environment that can cause damage.

Essential parts of electroplating

photo
Difference between Mn+ and complex ions
Complex ions release metal ions slowly. Therefore its concentration is low. It’s important to obtain a smooth ending.

Additional electrolyte can be used to increase the conductivity of the system but it will not effect the solution’s ions. Sodium sulphate is an additional electrolyte.

Additives
Additives increase the quality of the electroplating.
-Brighteners: Saccaric acid, Thiourea
-Levelers:  Formaldehydes
-stress relievers: organic substances
-wetting agents: Sodium lauryl suphate

Factors affecting the quality of the electroplating
-Nature of the electrolyte
-Concentration of the electrolyte
-Purity of the electrolyte
-Nature of the additives
-Concentration of the additives (should be low)
-pH of the solution
-Temperature
-Current density
-Geometry of the electrode(whether it’s round or flat)
-Shape of the bath
-Flow conditions (stirring is good)


Hull cell
To study the quality of electroplating dependence on the current density.

Haring-Blum cell
To determine the throwing power of the electroplating process. 


10 January 2012

Bonding in transition metal complexes:- Valence bond theory, Crystal field theory, Molecular orbital theory


There are three theories of metal to ligand bonding in complexes.

Valence bond theory
 Coordination compounds contain complex ions, in which ligands form coordinate bonds to the metal. Thus the ligand must have a lone pair of electrons, and the metal must have an empty orbital of suitable energy available for bonding. The theory considers which atomic orbitals on the metal are used for bonding. From this the shape and the stability of the complexes are predicted. The theory has two main limitations. Most transition metal complexes are coloured, but the theory provides no explanation for their electronic spectra. Further, the theory does not explain why the magnetic properties vary with temperature. For these reasons it has largely been superseded by the crystal field theory. However it is of interest for study as it shows the continuity of the development of modern ideas from Werner’s theory.

Crystal field theory
The attraction between the central metal and ligands in the complex is considered to be purely electrostatic. Thus bonding in the complex may be ion-ion attraction (between positive and negative ions such as Co3+ and Cl-).  Alternatively, ion-dipole attractions may give rise to bonding (if the ligand is a neutral molecule such as NH3 or CO).  This theory has been remarkably successful in explaining the electronic spectra and magnetism of transition metal complexes. Particularly when allowance is made for the possibility of some covalent interaction between the orbitals on the metal and ligand. When some allowance is made for covelencey, the theory is often renamed as the ligand field theory. Three types of interaction are possible. The σ overlap of orbitals, π overlap of orbitals, or dπ – pπ bonding (back bonding) due to π overlap of full d orbitals on the metal with empty p orbitals on the ligands.

Molecular orbital theory
Both covalent and ionic contributions are fully allowed for in this theory. Though this theory is the probably the most important approach to chemical bonding, it has not displaced on the other theories. This is because the quantitative calculations involved are difficult and lengthy, involving the use of extensive computer time. Much of the qualitative description can be obtained by other approaches using symmetry and group theory.

Reference: Inorganic chemistry, J.D Lee 

09 January 2012

Preparation of solid derivatives of Carbonyl compounds (aldehydes & ketones) :- 2, 4- Dintrophenylhydrazones, Semicarbazones


The systematic procedure that involves several steps and preparations is carried out to identify unknown compounds to some extent. The preparation of derivatives usually establishes the identification of the unknown with certainty. Here the term derivative is simply referred to a compound prepared from an unknown, in order to identify the unknown compound. An ideal derivative should be a crystalline, easily purified solid with a sharp melting point, which can be prepared readily from the unknown in one direct and unambiguous step.

Many carbonyl compounds can be synthesized from the esterification reaction. There are excellent and conveniently prepared derivatives which use to identify carbonyl compounds. Oximes, Phenyl hydrazones, 2, 4-dinitrophenylhydrazones and semicarbazones are some of the best derivatives of aldehydes and ketones. In the preparation of each of these types of derivatives, the elimination of a water molecule between a molecule of the carbonyl compound and a molecule of the reagent is involved.

Dinitrophenylhydrazine is relatively sensitive to shock and friction. It is a red to orange solid usually supplied wet to reduce its explosive hazard. This is often used as a qualitative test for carbonyl groups, associated with aldehydes and ketones. The hydrazone derivatives can be used as evidence toward the identity of the original compound. These are usually yellow-red colour crystals. Crystals of different hydrazones have characteristic melting and boiling points allowing the identification of the unknown substance.

Semicarbazone is one of the most commonly used derivatives to identify aldehydes and ketones. It is a derivative of an aldehyde or ketone formed by a condensation reaction between a ketone or aldehyde and the reagent; semicarbazide. As semicarbazides are not very stable in the free form, they are usually stored in the laboratory in the form of their hydrochloride salts. Many semicarbazones are off white, crystalline solids, useful for the identification of the parent carbonyl group by melting point analysis.

08 January 2012

conductometric titrations



In conductometric titrations, the electrical conductivity of an electrical solution is continuously monitored as one reactant is added. The accurate endpoint of can be determined by detecting a sudden change in the conductivity of the solution. It is particularly useful in titrating weak acids against weak bases. According to Ohm’s law;

I = E/R                                        

Also,
R ∝ l
R ∝ 1/A                                                   

Therefore;
R = ρ l/A
ρ = RA/l

I = Current, E= electromotive force, R= Resistance, l = Length, A= cross section area, ρ= Resistivity
The reciprocal of resistivity is conductivity. It can be expressed as K.

K = 1/ ρ
    = 1l / RA
    = G l/A

G is the conductance.

In the titration, the conducting material is the solution. So the conductance depends on the type of ions in the solution and their concentration. If the solution is located between two electrodes at constant distance and cross section area, conductance will increase when the concentration of the solution decreases.
Also when l and A are constant it is clear that,

K ∝ G

These conditions can be obtained by using a conductivity cell that consisting a pair of platinum electrodes connected to the conductivity bridge which provides current to the cell. The meter will give out the calculated conductivity of the solution.


01 January 2012

Nitration of acetanilide (Lab report)


Introduction
Nitration is a type of chemical reaction which a nitro group is added to/substituted in a molecule. Basically it can be carried out by a mixture of concentrated nitric acid and sulphuric acid. Mixture is useful to obtain the active nitronium ion. Electrophilic aromatic substitution is a method used when a functional group is needed to be substituted on to an aromatic compound. In the nitration, nitronium ion acts as the electrophile that involves the attack of the electron-rich Benzene ring. In this experiment nitration is carried out using acetanilide.

Theory
Acetanilide displays moderately reactivity in electrophilic aromatic substitution. Also another advantage is, it’s not oxidized by nitric acid. Principally, acetanilide gives Ortho and Para mono nitroacetanilides. This position of nitronium ion is directed by the –NHCOCH3 group attached to the benzene ring. This is due to the resonance delocalizing the benzene ring by nitrogen lone pair. Therefore Ortho and Para positions are more resonance stabilized than the Meta. Acetanilide undergoes ready nitration giving mainly the colourless P-nitroacetanilide, mixed with much smaller proportion of the yellow colour O-nitroacetanilide.

Procedure
·         About 2g of powdered acetanilide and 2mL of Glacial acetic acid were mixed well in a 100mL beaker.  4mL of con.H2SO4 was added to the mixture.
·         The beaker was placed in crushed ice until the temperature of the mixture was dropped down to 0-50C.
·         4mL of con.H2SO4 was added drop wisely while stirring the viscous mixture continuously keeping the temperature below 100C.
·         Afterwards the beaker was removed from the freezing conditions and allowed to stand 30 minutes at room temperature.
·         The mixture was poured onto about 20g of crushed ice and stirred to obtain crystals. The beaker was rinsed with 10mL of water containing few fragments of ice and the solution was added to the main bulk of the product.
·         It was allowed to stand for about 20minutes.
·         Later it was filtered at the pump and washed thoroughly with cold water.
·         Afterwards the crude product was recrystalized with water.
·         Finally the melting point of the product was determined.

Observations
·         Acetanilide powder was white in colour.
·         Glacial acitic acid, H2SO4 and acetanilide mixture was initially in pale yellow colour.
·         In cold condition, white colour crystals were formed.
·         Final purified crystals were also white.
·         The determined melting point range was 150-1520C.

Conclusion
The initial compounds used were known. Therefore according to those the final product should be nitroacetanilide. As the colour of the product was white, it should be Para nitroacetanilide.  

Discussion
Through the use of electrophilic aromatic substitution, acetanilide is nitrated to nitroacetanilide. There are several key steps involved in the nitration. The first step of the reaction involved in the donation of an electron pair by the acetanilide to the eletrophile, the nitronium ion. This nitronium ion was formed by the reaction of sulfuric and nitric acids. Basically the whole mechanism undergoes as below; (Benzene is shown here instead of acetanilide )

Image via en.wikipedia.org

To prevent dinitration of the acetanilide, the nitrating mixture of concentratred nitric acid and sulfuric acids were added in small portions to the acetanilide solution, so that the concentration of the nitrating agent is kept at minimum.

Also the addition of nitric acid is exothermic. Therefore the mixture would get too hot exceeding the temperature range suitable for the nitration. To avoid this, the addition of HNO3 acid should be done very slowly, dropwisely.

Cold temperatures were used to slowdown the reaction rate and help to avoid over nitration.

Glacial acetic acid is used because it is a polar solvent capable of dissolving acetanilide and the acetate ion is a poor nucleophile, so no substitution is possible.

At the end, traces of acid should be removed because hydrogen ions catalyze the hydrolysis of the amide to p-nitroaniline. Acid is removed by pouring the mixture onto ice and water and filtering.

The melting point is determined to characterize the product. Theoretical melting point of the Para nitroacetanilide is found to be 214-2160C. The observed value was 150-1520C and it is much lower than the theoretical values and can be accounted for impurities in the product. Some impurities might be Ortho and Meta directing substances. Also there can be some experimental errors occurred during the experiment such as not controlling the exact temperatures mentioned for the reactions.