Welcome to JAAN's science class!!

Big hi to all of you! I'm an undergraduate following a Bsc in bioscience. Trust me I know the feeling of surfing around the net for ages and getting nothing in return! Or getting something worthless for the time we spent surfing. So I started this blog adding the science stuff I have noted which I think might help someone in their home work. Ok then enjoy!

09 January 2012

Preparation of solid derivatives of Carbonyl compounds (aldehydes & ketones) :- 2, 4- Dintrophenylhydrazones, Semicarbazones


The systematic procedure that involves several steps and preparations is carried out to identify unknown compounds to some extent. The preparation of derivatives usually establishes the identification of the unknown with certainty. Here the term derivative is simply referred to a compound prepared from an unknown, in order to identify the unknown compound. An ideal derivative should be a crystalline, easily purified solid with a sharp melting point, which can be prepared readily from the unknown in one direct and unambiguous step.

Many carbonyl compounds can be synthesized from the esterification reaction. There are excellent and conveniently prepared derivatives which use to identify carbonyl compounds. Oximes, Phenyl hydrazones, 2, 4-dinitrophenylhydrazones and semicarbazones are some of the best derivatives of aldehydes and ketones. In the preparation of each of these types of derivatives, the elimination of a water molecule between a molecule of the carbonyl compound and a molecule of the reagent is involved.

Dinitrophenylhydrazine is relatively sensitive to shock and friction. It is a red to orange solid usually supplied wet to reduce its explosive hazard. This is often used as a qualitative test for carbonyl groups, associated with aldehydes and ketones. The hydrazone derivatives can be used as evidence toward the identity of the original compound. These are usually yellow-red colour crystals. Crystals of different hydrazones have characteristic melting and boiling points allowing the identification of the unknown substance.

Semicarbazone is one of the most commonly used derivatives to identify aldehydes and ketones. It is a derivative of an aldehyde or ketone formed by a condensation reaction between a ketone or aldehyde and the reagent; semicarbazide. As semicarbazides are not very stable in the free form, they are usually stored in the laboratory in the form of their hydrochloride salts. Many semicarbazones are off white, crystalline solids, useful for the identification of the parent carbonyl group by melting point analysis.

08 January 2012

conductometric titrations



In conductometric titrations, the electrical conductivity of an electrical solution is continuously monitored as one reactant is added. The accurate endpoint of can be determined by detecting a sudden change in the conductivity of the solution. It is particularly useful in titrating weak acids against weak bases. According to Ohm’s law;

I = E/R                                        

Also,
R ∝ l
R ∝ 1/A                                                   

Therefore;
R = ρ l/A
ρ = RA/l

I = Current, E= electromotive force, R= Resistance, l = Length, A= cross section area, ρ= Resistivity
The reciprocal of resistivity is conductivity. It can be expressed as K.

K = 1/ ρ
    = 1l / RA
    = G l/A

G is the conductance.

In the titration, the conducting material is the solution. So the conductance depends on the type of ions in the solution and their concentration. If the solution is located between two electrodes at constant distance and cross section area, conductance will increase when the concentration of the solution decreases.
Also when l and A are constant it is clear that,

K ∝ G

These conditions can be obtained by using a conductivity cell that consisting a pair of platinum electrodes connected to the conductivity bridge which provides current to the cell. The meter will give out the calculated conductivity of the solution.


01 January 2012

Nitration of acetanilide (Lab report)


Introduction
Nitration is a type of chemical reaction which a nitro group is added to/substituted in a molecule. Basically it can be carried out by a mixture of concentrated nitric acid and sulphuric acid. Mixture is useful to obtain the active nitronium ion. Electrophilic aromatic substitution is a method used when a functional group is needed to be substituted on to an aromatic compound. In the nitration, nitronium ion acts as the electrophile that involves the attack of the electron-rich Benzene ring. In this experiment nitration is carried out using acetanilide.

Theory
Acetanilide displays moderately reactivity in electrophilic aromatic substitution. Also another advantage is, it’s not oxidized by nitric acid. Principally, acetanilide gives Ortho and Para mono nitroacetanilides. This position of nitronium ion is directed by the –NHCOCH3 group attached to the benzene ring. This is due to the resonance delocalizing the benzene ring by nitrogen lone pair. Therefore Ortho and Para positions are more resonance stabilized than the Meta. Acetanilide undergoes ready nitration giving mainly the colourless P-nitroacetanilide, mixed with much smaller proportion of the yellow colour O-nitroacetanilide.

Procedure
·         About 2g of powdered acetanilide and 2mL of Glacial acetic acid were mixed well in a 100mL beaker.  4mL of con.H2SO4 was added to the mixture.
·         The beaker was placed in crushed ice until the temperature of the mixture was dropped down to 0-50C.
·         4mL of con.H2SO4 was added drop wisely while stirring the viscous mixture continuously keeping the temperature below 100C.
·         Afterwards the beaker was removed from the freezing conditions and allowed to stand 30 minutes at room temperature.
·         The mixture was poured onto about 20g of crushed ice and stirred to obtain crystals. The beaker was rinsed with 10mL of water containing few fragments of ice and the solution was added to the main bulk of the product.
·         It was allowed to stand for about 20minutes.
·         Later it was filtered at the pump and washed thoroughly with cold water.
·         Afterwards the crude product was recrystalized with water.
·         Finally the melting point of the product was determined.

Observations
·         Acetanilide powder was white in colour.
·         Glacial acitic acid, H2SO4 and acetanilide mixture was initially in pale yellow colour.
·         In cold condition, white colour crystals were formed.
·         Final purified crystals were also white.
·         The determined melting point range was 150-1520C.

Conclusion
The initial compounds used were known. Therefore according to those the final product should be nitroacetanilide. As the colour of the product was white, it should be Para nitroacetanilide.  

Discussion
Through the use of electrophilic aromatic substitution, acetanilide is nitrated to nitroacetanilide. There are several key steps involved in the nitration. The first step of the reaction involved in the donation of an electron pair by the acetanilide to the eletrophile, the nitronium ion. This nitronium ion was formed by the reaction of sulfuric and nitric acids. Basically the whole mechanism undergoes as below; (Benzene is shown here instead of acetanilide )

Image via en.wikipedia.org

To prevent dinitration of the acetanilide, the nitrating mixture of concentratred nitric acid and sulfuric acids were added in small portions to the acetanilide solution, so that the concentration of the nitrating agent is kept at minimum.

Also the addition of nitric acid is exothermic. Therefore the mixture would get too hot exceeding the temperature range suitable for the nitration. To avoid this, the addition of HNO3 acid should be done very slowly, dropwisely.

Cold temperatures were used to slowdown the reaction rate and help to avoid over nitration.

Glacial acetic acid is used because it is a polar solvent capable of dissolving acetanilide and the acetate ion is a poor nucleophile, so no substitution is possible.

At the end, traces of acid should be removed because hydrogen ions catalyze the hydrolysis of the amide to p-nitroaniline. Acid is removed by pouring the mixture onto ice and water and filtering.

The melting point is determined to characterize the product. Theoretical melting point of the Para nitroacetanilide is found to be 214-2160C. The observed value was 150-1520C and it is much lower than the theoretical values and can be accounted for impurities in the product. Some impurities might be Ortho and Meta directing substances. Also there can be some experimental errors occurred during the experiment such as not controlling the exact temperatures mentioned for the reactions.

16 December 2011

Controlling metabolism at cellular level: Compartmentation


Metabolism is composed of reaction sequences termed as metabolic pathways. The changes at each step in a metabolic pathway are regulated in order to maintain the stability and survival of the organism. Mainly there are four ways of controlling metabolism. Such one important way of controlling metabolism at cellular level is compartmentation.

When considering a eukaryotic cell; it’s composed of many different compartments known as sub cellular organelles in contrast to a prokaryotic cell. Each organelle contributes a specific metabolic function with different enzymatic activities under different conditions. These metabolic pathways needed to be interconnected to maintain the metabolism. Therefore compartmentation allows the distribution of metabolites and enzymes between the membranes bounded organelles. It’s the method that enables the cell to obtain different metabolic activities at the same time for more energy efficiency. For an example, glycolysis occurs in the cytoplasm and provides the mitochondria substrates such as pyruvates from carbohydrate oxidation. TCA cycle occurs within the mitochondrion matrix while oxidative phosphorylation occurs in mitochondria inner membrane. However, altogether all these three processes are included in one metabolism called ‘cell respiration’. Enzymes of each process are found where the processes take place.

Fat metabolism is another one good example for compartmentation. Fatty acids synthesis takes place in cytoplasm. Cytoplasm contains the required enzymes for the anabolism of fatty acid synthesis. But these fatty acids are degregaded in mitochondria supplying Acetyl Co A for TCA cycle. Mitochondria also contain the enzymes require for the catabolism of fat.

RNA polymerase allows RNA synthesis by using a template of DNA strand. It catalyzes the synthesis of RNA. RNA synthesis takes place in nucleus. DNA transcription also occurs in nucleus. Therefore both the RNA polymerase and DNA templates are available, so that the RNA synthesis is favorable. When considering protein synthesis, all the organelles used for it are close to one another. The nucleolus makes ribosome which synthesizes proteins. Endoplasmic reticulum is near the nucleus to receive Ribosomes and synthesized proteins. The Golgi apparatus is also near the endoplasmic reticulum for storing, packaging and distribution. Therefore all the activities within a cell are cooperated with one another.

Hence, compartmentation helps metabolic controlling by maintaining substrates, regulators and enzymes in separate locations with only favoured access between them.