Welcome to JAAN's science class!!

Big hi to all of you! I'm an undergraduate following a Bsc in bioscience. Trust me I know the feeling of surfing around the net for ages and getting nothing in return! Or getting something worthless for the time we spent surfing. So I started this blog adding the science stuff I have noted which I think might help someone in their home work. Ok then enjoy!

23 June 2012

Different kinds of bacteriophages (phages)


M13
Filamentous.
About 870nm in length and 6nm in width.
Consists of single stranded DND (ssDNA).
Three kinds of capsomeres build the capside.
Infects E. coli by adsorbing to the cell and entering through F pilli. Therefore only infect F+ and HFr cells. Also male specific.
Does not kill the host. Particles are released by budding, therefore when the particles are released, the host cell is alive.
An efficient vector in gene cloning as it can hold longer pieces of foreign DNA.

T phage
Structure is composed of icosahedral head, double stranded DNA and a tail.
Infects E.coli
 Main types of T phages are T2, T4 and T12.
In the infection linear DNA of the phage is released to the host cell and becomes circular by replicating that later produces a long DNA chain known as ‘Concatamen’. This coils into the phage’s head by headfull mechanism while packaging.
Infection kills the host cell as the new particles are released outside by bursting the host cell.

Lambda (λ)
Composed of head and tail.
Head is consisting of double stranded linear DNA.
At both 5’ ends of the DNA strand, 12 complementary base pair, single stranded segments are present. These two ends are known as “cos ends”.
Because of the cos ends, phage chromosome circularizes before replication. Concatamen is produced during the replication and during the packaging, Terminase enzyme cuts off the cos ends.
Host cell is E.coli.

MS2
Contains the smallest known genome.
Super coiled single stranded DNA.
Infect only through sex pilli. Therefore male specific.
Infect E.coli.

Phi×174(ΦX174)
Contains a single stranded circular DNA.
After adsorption, synthesizes the complementary strand and becomes double stranded.
Use as a positive control in DNA sequencing.

G4
Structurally similar to ΦX174 phage.
Can infect susceptible E.coli cells. 



06 May 2012

Serotonin the neurotransmitter


Serotonin i.e. 5-hydroxytryptamine (5-HT) is a monoamine neurotransmitter that is said to be helping to relay signals from one area of the brain to another. However its primary functions are found in gastrointestinal tract as 90% of total serotonin is located in the enterochromaffin cells in the gut. 

Serotonin is made via a unique biochemical conversion process that begins with Tryptophan. Tryptophan is a building block to proteins. In the synthesis of serotonin, Tryptophan hydroxylase the enzyme combines with tryptophan to form 5-hydroxytryptophan metabolite that later converts to Serotonin.

 On top a L-tryptophan molecule with an arrow down to a 5-HTP molecule.  Tryptophan hydroxylase catalyses this reaction with help of O2 and tetrahydrobiopterin which becomes water and dihydrobiopterin. From the 5-HTP molecule goes an arrow down to a serotonin molecule. Aromatic L-amino acid decarboxylase or 5-Hydroxytryptophan decarboxylase catalyses this reaction with help of pyridoxal phosphate. From the serotonin molecule goes an arrow to a 5-HIAA molecule at the bottom ot the image. Monoamine oxidase catalyses this reaction, in the process O2 and water is consumed, and ammonia and hydrogen peroxide is produced.
Via wikipedia.org

As mentioned earlier serotonin helps to distribute messages across the brain. Brain cells related to mood, appetite, sleep, memory, learning, temperature regulation, sexual desire and some social behaviour are influenced either directly or indirectly by serotonin due to the widespread distribution in the brain. 
It can also affect the functioning of the cardiovascular system, muscles, and various elements in the endocrine system.

When it comes to mental health, it is widely believed that a serotonin deficiency plays a role in depression but there is no way to measure its levels in the living brain. Therefore, there have not been any studies proving that brain levels of this or any neurotransmitter are in short supply when depression or any mental illness develops. People who suffer from depression shows lower serotonin levels in blood levels but still it is not revealed that whether the blood levels reflect the brain's level of serotonin.

Antidepressant medications such as SSRIs (selective serotonin reuptake inhibitors) and SNRIs (serotonin and norepinephrine reuptake inhibitors) that work on serotonin levels are believed to lower the symptoms of depression, but their exact function is not fully understood.

Recent studies show that when the Mycobacterium vaccae, which occurs naturally in soil and is often breathed in when spending much time nature, is injected into mice, it stimulates neuron growth and causes serotonin levels in blood to increase. So that the bacteria could have antidepressant benefits but it is not yet revealed whether it has an effect on human.


02 May 2012

Simple facts about Betalain


Betalains are alkaloid pigments which are found in some families of plants belonging to the order Caryophyllales, but in no other plants.
They are named after the Beet family of plants (Beta).


photo


Betalains are not found in plants containing anthocyanin pigments. Structurally they are unrelated. Unlike anthocyanins, they are not pH indicators as their colour is stable over a wide range of pH.  They are oxidised over time going brown in colour. This can be prevented by 0.1% ascorbic acid.

They have also been found in some fungi too e.g. Fly Agaric (mushroom)
Betalains can be divided into two types as betacyanins and betaxanthins; based upon their molecular structure.
Betacyanins
Usually appear red to red violet in colour (absorbance in 535-550nm)

Betaxanthins
Usually appear yellow in colour (absorbance in 475-480nm)

Betalains are found in the vacuole and they are water-soluble.
Also they cause colour in both flowers, fruits and sometimes vegetative organs
Beetroot contains 2 Betacyanins. Thay are Betanin and a derivative.

Not much is known about the role of betalains. Commercially they are sometimes used as food colourants. As a food dye it’s cheap and no all allergic side effects are figured out yet.

Basic structure of betalain